diff --git a/.github/scripts/sync-wiki.py b/.github/scripts/sync-wiki.py
index ebf543c7..51f3e404 100644
--- a/.github/scripts/sync-wiki.py
+++ b/.github/scripts/sync-wiki.py
@@ -5,6 +5,7 @@ from pathlib import Path
 
 DOCS_DIR = Path("docs")
 WIKI_DIR = Path("wiki-temp")
+LATEST_DIR = DOCS_DIR / "(git)"
 
 FRONTMATTER_RE = re.compile(r"\A---\s*\n.*?^---\s*\n", re.DOTALL | re.MULTILINE)
 DOCS_LINK_RE = re.compile(r"\[([^\]]+)\]\(/docs/(?:[^/)]+/)*([^/)#]+)(#[^)]+)?\)")
@@ -20,10 +21,10 @@ def collect_all_files() -> list[tuple[Path, str]]:
             return [directory / f"{p}.md" for p in data.get("pages", []) if (directory / f"{p}.md").exists()]
         return sorted(directory.glob("*.md"))
 
-    for src in from_dir(DOCS_DIR):
+    for src in from_dir(LATEST_DIR):
         files.append((src, "Home" if src.stem == "index" else src.stem))
 
-    for subdir in sorted(DOCS_DIR.iterdir()):
+    for subdir in sorted(LATEST_DIR.iterdir()):
         if subdir.is_dir():
             for src in from_dir(subdir):
                 files.append((src, src.stem))
@@ -44,7 +45,7 @@ def main() -> None:
     lines: list[str] = []
     current_section = None
     for src, dest_name in files:
-        section = "General" if src.parent == DOCS_DIR else src.parent.name.replace("-", " ").title()
+        section = "General" if src.parent == LATEST_DIR else src.parent.name.replace("-", " ").title()
         if section != current_section:
             if current_section is not None:
                 lines.append("")
diff --git a/.github/workflows/generate-nix-options-docs.yml b/.github/workflows/generate-nix-options-docs.yml
index 7249ef46..ff6006c1 100644
--- a/.github/workflows/generate-nix-options-docs.yml
+++ b/.github/workflows/generate-nix-options-docs.yml
@@ -53,11 +53,11 @@ jobs:
           python3 ./.github/scripts/generate-nix-options-docs.py \
             /tmp/nixos-raw.md \
             /tmp/hm-raw.md \
-            docs/nix-options.md
+            'docs/(git)/nix-options.md'
 
       - name: Auto-commit changes
         uses: stefanzweifel/git-auto-commit-action@v5
         with:
           commit_message: "docs: auto-generate Nix module options"
-          file_pattern: 'docs/*-options.md'
+          file_pattern: 'docs/**/nix-options.md'
           branch: ${{ github.head_ref }}